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Pip Install Numpy Error Code 1

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I do not know why. Try this? $ sudo chown -R username:username /usr/local/lib/python2.7/ $ pip install --upgrade scikit-learn I think this should work (assuming you are able to run chown with elevated privileges...) napsternxg commented Nov more stack exchange communities company blog Stack Exchange Inbox Reputation and Badges sign up log in tour help Tour Start here for a quick overview of the site Help Center Detailed Press the t key to toggle the "advanced" settings. this contact form

What are the advantages of doing accounting on your personal finances? mcooganj commented Dec 18, 2012 Okay, that was silly of me - but i only included both to suggest that the problem is not specific to pandas. Backing NumPy with OpenBLAS and/or Intel MKL has become considerably easier with NumPy 1.8 and thus many of the tutorials you'll find on the internet are outdated and overcomplicated. If the library was prepared using dUTP chemistry, as in many paired-end prep kits, select read2 from each pair using samtools: $ samtools view -f 129 -b -o single_from_pair.bam paired_end_file.bam http://stackoverflow.com/questions/28142839/pip-install-numpy-python-2-7-fails-with-errorcode-1

Failed With Error Code 1 Pip

InsecurePlatformWarning Requirement already up-to-date: numpy in /usr/local/lib/python2.7/dist-packages napsternxg commented Nov 26, 2015 Some more information: I wrote a small package of my own with similar numpy check as the one used But for packages with C-extensions. for info on using plastid with paired-end data.

If it didn't, either you already failed doing that correctly for NumPy, or maybe you left the virtualenv. (NOTE/TODO: Recent versions fail because they don't link -lm, -lpthread and -lgfortran which We'll need nose for that, so we'll install it using pip and then run NumPy's test suite: (sci-env3)$ pip install nose (sci-env3)$ python -c 'import numpy; numpy.test()' A dot represents a Already have an account? Failed With Error Code 1 In /tmp/pip-build This is why conda exists.

For more information, see https://urllib3.readthedocs.org/en/latest/security.html#insecureplatformwarning. Pip Install Scipy Failed With Error Code 1 Optionally, you can add the ~/inst/bin and friends to your PATH and friends environment variables. We recommend upgrading to the latest Safari, Google Chrome, or Firefox. https://codedump.io/share/tQWa3zOwjlzM/1/pip-fails-to-install-numpy-error-code-1 It would be helpful!

import multiarray SystemError: initialization of multiarray raised unreported exception >>> And what I observed by accident: if I import numpy twice, python segfaults. 👍 2 bobikaBo commented Apr 19, 2016 Failed Building Wheel For Scipy A lot of workplaces suck in the sense that they don't want to give their developers full control over their computer. Command-line scripts will be installed wherever your system configuration dictates. I especially patched the distutils to tell it the location of ranlib in case you don't have the "Command Line Tools for Xcode".

Pip Install Scipy Failed With Error Code 1

Caveat emptor: PyPlot doesn't work with matplotlib 1.4 yet, so there's that. MKL In case you do have an MKL license, you might want to go for MKL instead of OpenBLAS. Failed With Error Code 1 Pip Did millions of illegal immigrants vote in the 2016 USA election? Failed Building Wheel For Numpy How do I prepare data for differential gene expression analysis in DESeq?¶ See Gene expression analysis in the Tutorials section.

To emailaddress: To name: From name: Extra information in the email body (optional): Email: I am sending you the codedump of pip fails to install numpy error code 1 that you http://exactcomputerrepair.com/error-code/pin-pad-error-code-54.html Then align the reverse-complemented data using your favorite aligner. This got you into OpenCV's configure dialog. Personal Open source Business Explore Sign up Sign in Pricing Blog Support Search GitHub This repository Watch 1,053 Star 29,432 Fork 13,947 Homebrew/legacy-homebrew Code Issues 0 Pull requests 0 Projects Pip Install Failed With Error Code 1 Windows

The reason we use the latest master is that none of the 2.x versions of OpenCV support Python3, only the current master (and future version 3.x) does. What dice mechanic gives a bell curve distribution that narrows and increases mean as skill increases? Why does SegmentChain.as_gff3() sometimes throw errors?¶ The incredible fle flexibility of the GFF3 file format introduces ambiguities for representation of discontinuous features: some sort of parent-child relationship needs to exist, http://exactcomputerrepair.com/error-code/pip-error-code-128.html done Successfully installed numpy-1.11.1 $ python Python 3.5.2 (default, Jul 19 2016, 10:10:11) [GCC 4.9.x 20150123 (prerelease)] on linux Type "help", "copyright", "credits" or "license" for more information. >>> import numpy

napsternxg commented Nov 24, 2015 @rvraghav93 $ pip install --upgrade scikit-learn /usr/local/lib/python2.7/dist-packages/pip/_vendor/requests/packages/urllib3/util/ssl_.py:90: InsecurePlatformWarning: A true SSLContext object is not available. Numpy Wheel alextz commented Apr 22, 2016 apt install gcc did the trick, though it installed for python3. It can easily install NumPy.

Other plotting packages I follow closely are ContinuumIO's bokeh which aims to bring the grammar of graphics (i.e.

Not the answer you're looking for? Paired end libraries, and single-end libraries that have been prepared with dUTP sequencing or a number of other protocols will contain read alignments antisense to the original mRNAs, causing these reads They don't like to be linked statically only. Failed With Error Code 1 Lxml Btw, is there a way how to install libatlas-base-dev?

sci-env3.4/bin/activate $ curl https://bootstrap.pypa.io/get-pip.py | python Python < 3.3 For older versions of Python, most prominently version 2.7, you'll need to rely on a 3rd-party virtualenv creation tool, such as virtualenv: See Can I use plastid with reverse-complemented sequencing data, like dUTP sequencing? It contains the Python.h library. his comment is here For pandas there is libmsgpack in apt, but not sure if that is needed for read and write msgpack files with pandas.

So let's activate it: $ . ~/sci-env3/bin/activate (sci-env3)$ Or, for friends of fishes: $ . ~/sci-env3/bin/activate.fish With --enable-shared If you have chosen to compile Python with the --enable-shared flag, you'll need I will investigate more and will post here if I find any issues. Reload to refresh your session. For the sake of this article, I only really cared about LAPACK since both UMFPACK and FFTW are not strictly necessary; they only improve performance of sparse matrix operations and FFTs,

https://github.com/pypa/pip/issues Member GaelVaroquaux commented Nov 23, 2015 $ sudo pip install sklearn --upgrade Requirement already up-to-date: sklearn in /usr/local/lib/python2.7/dist-packages $ python -c "import numpy; print numpy.version" 1.10.1 Appartently the setup.py of Look at #4164 (comment) and related issues/PRs for example about why we decided to do it this way. Sign up for free to join this conversation on GitHub. Perhaps for the time being python 2.x with numpy and pandas would be ok. scikit-learn requires NumPy >= 1.6.1.

Tests The tests won't run Glossary of terms References Developer info Contributing Entrypoints Other information Citing plastid License Change log Related resources Contact plastid Docs » Frequently asked questions Edit If the error is not listed, let us know by filing a bug report at our issue tracker. env/bin/activate Install NumPy into it (env)$ cd ~/inst/src/numpy (env)$ python setup.py install (env)$ cd - (env)$ pip install nose (env)$ python -c 'import numpy; numpy.test()' Install SciPy into it (env)$ pip Please see Installer quits with an error message about numpy, pysam and Cython, above.

activating the virtualenv, the copy of the libs and the creation of the symlink! I could find the location. Notes on Tcl/Tk Installing those two guys from source wasn't possible without too much hassle, and since I don't need them, I didn't try harder. How should I tell my employer?

Can I get all my previous packages using pip?How do I get numpy to build for Python 3.3 64 bit on Windows 7?How can we install the Python package other than Skip to content Ignore Learn more Please note that GitHub no longer supports old versions of Firefox. Ditto for 5' and 3' UTRs Either one can be an appropriate starting place for a pipeline, depending upon your needs. followed by a directory for whatever package I was trying to install.

Despite having up-to-date versions of numpy, pysam, and Cython installed in the conda environment, during the build process pip found an incompatible version of Cython or of pysam. If you have a suggestion for one, please submit your suggestion with a use case on our issue tracker.